Variant report

Variant	rs59354577
Chromosome Location	chr4:91867865-91867866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11938241	1.00[AMR][1000 genomes]
rs55634325	1.00[AMR][1000 genomes]
rs55821522	1.00[AMR][1000 genomes]
rs56059278	1.00[AMR][1000 genomes]
rs58547412	1.00[AMR][1000 genomes]
rs61098294	1.00[AMR][1000 genomes]
rs6829855	1.00[AMR][1000 genomes]
rs73833900	1.00[AMR][1000 genomes]
rs73833901	1.00[AMR][1000 genomes]
rs73834563	1.00[AMR][1000 genomes]
rs73834564	1.00[AMR][1000 genomes]
rs73834565	1.00[AMR][1000 genomes]
rs73834569	1.00[AMR][1000 genomes]
rs73836705	1.00[AMR][1000 genomes]
rs7689600	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2755332	chr4:91782522-91869222	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv10533	chr4:91842776-91935992	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv594834	chr4:91866171-91872431	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91860800-91869200	Weak transcription	Gastric	stomach
2	chr4:91866200-91868000	Weak transcription	A549	lung
3	chr4:91867600-91868400	Enhancers	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links