Variant report

Variant	rs73836705
Chromosome Location	chr4:91754634-91754635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11938241	1.00[AMR][1000 genomes]
rs17017712	0.85[AFR][1000 genomes]
rs17017713	0.92[AFR][1000 genomes]
rs17017714	0.92[AFR][1000 genomes]
rs17017719	0.92[AFR][1000 genomes]
rs55634325	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55821522	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56059278	1.00[AMR][1000 genomes]
rs58547412	1.00[AMR][1000 genomes]
rs59354577	1.00[AMR][1000 genomes]
rs61098294	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62311074	0.85[AFR][1000 genomes]
rs62311075	0.89[AFR][1000 genomes]
rs62311109	0.92[AFR][1000 genomes]
rs62311110	0.92[AFR][1000 genomes]
rs62311112	0.92[AFR][1000 genomes]
rs6829855	1.00[AMR][1000 genomes]
rs6848010	1.00[EUR][1000 genomes]
rs72663648	0.85[AFR][1000 genomes]
rs72663649	0.92[AFR][1000 genomes]
rs73833900	1.00[AMR][1000 genomes]
rs73833901	1.00[AMR][1000 genomes]
rs73834563	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73834564	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73834565	1.00[AMR][1000 genomes]
rs73834569	1.00[AMR][1000 genomes]
rs7689600	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv4422	chr4:91744177-91789188	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv980142	chr4:91751677-91756947	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91746200-91761400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:91752400-91775000	Weak transcription	Pancreas	Pancrea
3	chr4:91754200-91755400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr4:91754200-91756000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:91754400-91754800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr4:91754400-91754800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:91754400-91754800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr4:91754400-91754800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr4:91754400-91755200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:91754600-91755000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr4:91754600-91755400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:91754600-91756000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:91754600-91771400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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