Variant report

Variant	rs58559761
Chromosome Location	chr15:52022677-52022678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52015670..52018450-chr15:52021031..52024231,3	K562	blood:
2	chr15:51912795..51914902-chr15:52021958..52024650,2	K562	blood:
3	chr15:52017711..52021761-chr15:52022558..52024765,3	K562	blood:
4	chr15:52018882..52021181-chr15:52022278..52024418,2	K562	blood:
5	chr15:52022549..52025740-chr15:52026646..52031094,6	K562	blood:

Variant related genes	Relation type
ENSG00000140280	Chromatin interaction
ENSG00000104093	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10519324	0.90[AFR][1000 genomes]
rs16964509	0.90[AFR][1000 genomes]
rs16964513	0.90[AFR][1000 genomes]
rs17648915	1.00[AFR][1000 genomes]
rs17648927	1.00[AFR][1000 genomes]
rs17705437	1.00[AFR][1000 genomes]
rs57399438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58434025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59426894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60590663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405322	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73405324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405368	0.95[AFR][1000 genomes]
rs73405370	0.95[AFR][1000 genomes]
rs73405377	0.95[AFR][1000 genomes]
rs73405389	0.95[AFR][1000 genomes]
rs73405400	0.95[AFR][1000 genomes]
rs73407328	0.95[AFR][1000 genomes]
rs73407332	0.85[AFR][1000 genomes]
rs73407339	0.90[AFR][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52000800-52024000	Weak transcription	Gastric	stomach
2	chr15:52007000-52023400	Weak transcription	Brain Anterior Caudate	brain
3	chr15:52008200-52023200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr15:52008400-52023400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:52011400-52023400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:52011600-52023400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:52012400-52024200	Weak transcription	Fetal Lung	lung
8	chr15:52013400-52023600	Weak transcription	Colonic Mucosa	Colon
9	chr15:52013600-52028200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:52013600-52028400	Weak transcription	Fetal Brain Female	brain
11	chr15:52013600-52028800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:52014000-52023000	Weak transcription	Stomach Mucosa	stomach
13	chr15:52014800-52023000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr15:52016800-52023000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr15:52017200-52022800	Weak transcription	Liver	Liver
16	chr15:52017200-52023400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr15:52017400-52023600	Weak transcription	Placenta	Placenta
18	chr15:52017600-52023400	Weak transcription	Fetal Intestine Large	intestine
19	chr15:52018400-52023000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr15:52019000-52023600	Weak transcription	Fetal Muscle Leg	muscle
21	chr15:52019000-52023800	Weak transcription	Brain Angular Gyrus	brain
22	chr15:52019000-52028200	Weak transcription	Brain Substantia Nigra	brain
23	chr15:52019200-52023400	Weak transcription	Adipose Nuclei	Adipose
24	chr15:52019200-52023600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:52019400-52023000	Weak transcription	Fetal Intestine Small	intestine
26	chr15:52019400-52023600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr15:52019400-52023800	Weak transcription	Brain Hippocampus Middle	brain
28	chr15:52019600-52023200	Weak transcription	Fetal Stomach	stomach
29	chr15:52019600-52024000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:52019800-52023000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr15:52019800-52023600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr15:52019800-52023600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr15:52019800-52023800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:52019800-52023800	Weak transcription	Aorta	Aorta
35	chr15:52020000-52023200	Weak transcription	Duodenum Mucosa	Duodenum
36	chr15:52020000-52023200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr15:52020000-52023200	Weak transcription	HSMMtube	muscle
38	chr15:52020000-52023200	Weak transcription	NHEK	skin
39	chr15:52020000-52023400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:52020000-52023400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr15:52020000-52023600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr15:52020000-52023600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:52020000-52023600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:52020000-52023600	Weak transcription	Pancreas	Pancrea
45	chr15:52020000-52023600	Weak transcription	Psoas Muscle	Psoas
46	chr15:52020000-52023600	Weak transcription	Hela-S3	cervix
47	chr15:52020000-52023600	Weak transcription	HSMM	muscle
48	chr15:52020000-52024000	Weak transcription	Esophagus	oesophagus
49	chr15:52020000-52024000	Weak transcription	Right Ventricle	heart
50	chr15:52020000-52024200	Weak transcription	Left Ventricle	heart

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