Variant report

Variant	rs73405389
Chromosome Location	chr15:52032659-52032660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52028100..52031772-chr15:52032552..52038946,7	MCF-7	breast:
2	chr15:52027363..52032665-chr15:52041435..52046045,23	MCF-7	breast:
3	chr15:51913765..51915437-chr15:52031923..52034915,2	MCF-7	breast:
4	chr15:52030420..52032691-chr15:52120807..52123246,2	MCF-7	breast:
5	chr15:52028355..52032748-chr15:52040539..52046492,10	K562	blood:

Variant related genes	Relation type
ENSG00000128872	Chromatin interaction
ENSG00000259377	Chromatin interaction
ENSG00000140280	Chromatin interaction
ENSG00000138594	Chromatin interaction
ENSG00000104093	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10519324	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953079	1.00[EUR][1000 genomes]
rs16964509	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16964513	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16964517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16964530	1.00[EUR][1000 genomes]
rs17648915	0.95[AFR][1000 genomes]
rs17648927	0.95[AFR][1000 genomes]
rs17649601	1.00[EUR][1000 genomes]
rs17705437	0.95[AFR][1000 genomes]
rs2554357	1.00[EUR][1000 genomes]
rs57399438	0.95[AFR][1000 genomes]
rs58356723	1.00[EUR][1000 genomes]
rs58434025	0.95[AFR][1000 genomes]
rs58559761	0.95[AFR][1000 genomes]
rs58958163	1.00[EUR][1000 genomes]
rs59426894	0.95[AFR][1000 genomes]
rs59522140	1.00[EUR][1000 genomes]
rs60590663	0.95[AFR][1000 genomes]
rs73405314	0.95[AFR][1000 genomes]
rs73405317	0.95[AFR][1000 genomes]
rs73405321	0.95[AFR][1000 genomes]
rs73405322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405324	0.95[AFR][1000 genomes]
rs73405338	0.95[AFR][1000 genomes]
rs73405339	0.95[AFR][1000 genomes]
rs73405346	0.95[AFR][1000 genomes]
rs73405351	0.95[AFR][1000 genomes]
rs73405368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407332	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407339	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409029	1.00[EUR][1000 genomes]
rs73409034	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830011	chr15:52027777-52048710	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a
2	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52030600-52032800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr15:52030600-52043200	Weak transcription	Gastric	stomach
3	chr15:52030800-52032800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr15:52031000-52033400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:52031200-52043000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:52032400-52032800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:52032400-52040800	Weak transcription	K562	blood
8	chr15:52032600-52032800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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