Variant report

Variant	rs58579517
Chromosome Location	chr6:132708613-132708614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11967491	0.82[EUR][1000 genomes]
rs2275393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275395	0.92[ASN][1000 genomes]
rs2275396	0.99[ASN][1000 genomes]
rs3861471	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4895936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897579	0.85[ASN][1000 genomes]
rs58101102	0.92[ASN][1000 genomes]
rs73547914	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9321341	0.91[ASN][1000 genomes]
rs9375879	0.85[ASN][1000 genomes]
rs9375880	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9375882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9402400	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886675	chr6:132683762-132730947	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604668	chr6:132687248-132731358	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604669	chr6:132702249-132712307	Enhancers Weak transcription Strong transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv5480	chr6:132705614-132714040	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3486501	chr6:132706459-132713557	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3486500	chr6:132706884-132713457	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3486503	chr6:132706884-132713457	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3486502	chr6:132707378-132712799	Enhancers Weak transcription Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
10	nsv499756	chr6:132707546-132712422	Enhancers Weak transcription Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
11	esv19195	chr6:132707651-132712477	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
12	nsv604670	chr6:132708163-132710831	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	nsv604671	chr6:132708163-132711117	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv604672	chr6:132708163-132711678	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	nsv604673	chr6:132708163-132711772	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	nsv604674	chr6:132708163-132711933	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
17	nsv604675	chr6:132708163-132712233	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
18	nsv604676	chr6:132708163-132712307	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
19	nsv604677	chr6:132708163-132718231	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv604678	chr6:132708327-132711678	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
21	nsv604679	chr6:132708327-132711772	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
22	nsv604680	chr6:132708327-132712233	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
23	nsv604681	chr6:132708327-132712307	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132692600-132709200	Weak transcription	Fetal Kidney	kidney
2	chr6:132693200-132709400	Weak transcription	Fetal Lung	lung
3	chr6:132701600-132709000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:132701600-132709400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:132701600-132713200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:132702000-132709400	Weak transcription	Osteobl	bone
7	chr6:132704200-132712800	Weak transcription	HSMMtube	muscle
8	chr6:132706400-132709200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:132706400-132709200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:132706400-132709400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:132706600-132711600	Weak transcription	Fetal Brain Male	brain
12	chr6:132707800-132709000	Weak transcription	NHDF-Ad	bronchial
13	chr6:132707800-132711800	Weak transcription	NHLF	lung

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