Variant report

Variant	rs4897579
Chromosome Location	chr6:132702249-132702250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11967847	0.80[ASN][1000 genomes]
rs1538308	0.82[CHD][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs17718924	1.00[GIH][hapmap]
rs1970334	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs2275393	0.85[ASN][1000 genomes]
rs2275395	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2275396	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2327211	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs4895936	0.91[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs58101102	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58579517	0.85[ASN][1000 genomes]
rs6923939	0.80[ASN][1000 genomes]
rs73547914	0.90[ASN][1000 genomes]
rs9321340	0.83[JPT][hapmap]
rs9321341	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9373016	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs9373017	0.80[ASN][1000 genomes]
rs9375873	0.86[EUR][1000 genomes]
rs9375874	0.86[EUR][1000 genomes]
rs9375875	0.86[EUR][1000 genomes]
rs9375879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375880	0.93[ASN][1000 genomes]
rs9375882	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs9388981	1.00[GIH][hapmap]
rs9388983	0.81[CHB][hapmap];0.86[EUR][1000 genomes]
rs9388984	0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs9388988	0.83[JPT][hapmap]
rs9399022	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs9402397	0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9402400	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs9493284	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886675	chr6:132683762-132730947	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604668	chr6:132687248-132731358	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv818455	chr6:132694751-132702249	Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv604669	chr6:132702249-132712307	Enhancers Weak transcription Strong transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132682200-132705800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:132692600-132709200	Weak transcription	Fetal Kidney	kidney
3	chr6:132693200-132709400	Weak transcription	Fetal Lung	lung
4	chr6:132694400-132705400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:132694600-132705800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:132700000-132702400	Weak transcription	NHDF-Ad	bronchial
7	chr6:132701600-132709000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:132701600-132709400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:132701600-132713200	Weak transcription	Primary B cells from cord blood	blood
10	chr6:132702000-132709400	Weak transcription	Osteobl	bone

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