Variant report

Variant	rs9388981
Chromosome Location	chr6:132635646-132635647
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:49346564..49349230-chr6:132633452..132636150,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124171	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17718924	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.93[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1983568	0.81[CHB][hapmap]
rs2206064	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.98[ASN][1000 genomes]
rs2223373	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.98[ASN][1000 genomes]
rs2235435	0.98[ASN][1000 genomes]
rs4897579	1.00[GIH][hapmap]
rs7762654	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[ASN][1000 genomes]
rs9375871	1.00[ASN][1000 genomes]
rs9385599	0.96[ASN][1000 genomes]
rs9388980	1.00[ASN][1000 genomes]
rs9399016	0.97[ASN][1000 genomes]
rs9399018	1.00[ASN][1000 genomes]
rs9402397	1.00[GIH][hapmap]
rs9493284	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9493286	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132626600-132651400	Weak transcription	Fetal Stomach	stomach
2	chr6:132632800-132636200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:132633000-132636200	Weak transcription	Fetal Brain Female	brain
4	chr6:132633800-132636200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:132633800-132636200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:132633800-132638600	Weak transcription	Osteobl	bone
7	chr6:132634600-132637400	Strong transcription	NHDF-Ad	bronchial
8	chr6:132634800-132636800	Weak transcription	Fetal Brain Male	brain
9	chr6:132634800-132638200	Weak transcription	Brain Germinal Matrix	brain
10	chr6:132635000-132638600	Weak transcription	Esophagus	oesophagus
11	chr6:132635200-132636000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:132635200-132636200	Enhancers	Stomach Mucosa	stomach
13	chr6:132635200-132637000	ZNF genes & repeats	Fetal Kidney	kidney
14	chr6:132635200-132637400	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:132635200-132638400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:132635400-132636600	ZNF genes & repeats	Primary B cells from cord blood	blood
17	chr6:132635400-132637000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:132635400-132637000	Strong transcription	Fetal Lung	lung
19	chr6:132635400-132637400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:132635400-132639600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:132635600-132655000	Weak transcription	NH-A	brain

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