Variant report

Variant	rs7762654
Chromosome Location	chr6:132620744-132620745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17718924	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes]
rs1983568	0.81[CHB][hapmap]
rs2206064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2223373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2235435	0.97[ASN][1000 genomes]
rs9375871	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9385599	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9388980	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9388981	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[ASN][1000 genomes]
rs9399016	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9399018	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9493284	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.97[ASN][1000 genomes]
rs9493286	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7762654	PPP6C	trans	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132611000-132625600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:132612600-132626400	Weak transcription	Fetal Stomach	stomach
3	chr6:132615800-132635400	Weak transcription	Fetal Lung	lung
4	chr6:132616200-132625200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:132616600-132625200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:132617200-132627600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:132617600-132626200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:132618400-132631600	Weak transcription	Fetal Kidney	kidney
9	chr6:132618600-132624600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:132618600-132626200	Weak transcription	Osteobl	bone
11	chr6:132618800-132634600	Weak transcription	NHDF-Ad	bronchial
12	chr6:132619000-132622800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:132619000-132625200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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