Variant report

Variant	rs2235435
Chromosome Location	chr9:123398294-123398295
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17718924	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2206064	0.97[ASN][1000 genomes]
rs2223373	0.97[ASN][1000 genomes]
rs7762654	0.97[ASN][1000 genomes]
rs9375871	0.98[ASN][1000 genomes]
rs9385599	0.95[ASN][1000 genomes]
rs9388980	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9388981	0.98[ASN][1000 genomes]
rs9399016	0.95[ASN][1000 genomes]
rs9399018	0.98[ASN][1000 genomes]
rs9493284	1.00[ASN][1000 genomes]
rs9493286	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33143	chr9:123253701-123471089	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv831711	chr9:123265308-123467641	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:123367800-123406800	Weak transcription	Thymus	Thymus
2	chr9:123367800-123424600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:123370800-123417600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr9:123378200-123398400	Weak transcription	Fetal Stomach	stomach
5	chr9:123385000-123423600	Weak transcription	Lung	lung
6	chr9:123391400-123408000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:123392000-123412400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:123392800-123417600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:123393600-123403600	Weak transcription	Brain Angular Gyrus	brain
10	chr9:123393600-123404000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:123393800-123404800	Weak transcription	Adipose Nuclei	Adipose
12	chr9:123395800-123407800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:123396800-123399000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:123397000-123399000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
15	chr9:123397400-123404600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:123397800-123398400	Strong transcription	A549	lung
17	chr9:123397800-123399200	Weak transcription	Liver	Liver
18	chr9:123397800-123400800	Weak transcription	Brain Hippocampus Middle	brain
19	chr9:123398000-123398400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:123398000-123398600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
21	chr9:123398000-123398600	ZNF genes & repeats	Fetal Lung	lung
22	chr9:123398000-123398600	ZNF genes & repeats	HSMM	muscle
23	chr9:123398000-123398800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:123398000-123399200	Enhancers	HepG2	liver
25	chr9:123398000-123409000	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr9:123398200-123398400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr9:123398200-123398400	ZNF genes & repeats	Aorta	Aorta
28	chr9:123398200-123398400	ZNF genes & repeats	Fetal Intestine Large	intestine
29	chr9:123398200-123398600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:123398200-123398800	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr9:123398200-123398800	ZNF genes & repeats	Fetal Intestine Small	intestine
32	chr9:123398200-123407800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links