Variant report

Variant	rs9388980
Chromosome Location	chr6:132627348-132627349
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17718924	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2206064	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2223373	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2235435	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7762654	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9375871	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9385599	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9388981	1.00[ASN][1000 genomes]
rs9399016	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9399018	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493284	0.98[ASN][1000 genomes]
rs9493286	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132615800-132635400	Weak transcription	Fetal Lung	lung
2	chr6:132617200-132627600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:132618400-132631600	Weak transcription	Fetal Kidney	kidney
4	chr6:132618800-132634600	Weak transcription	NHDF-Ad	bronchial
5	chr6:132624600-132627800	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:132625000-132627600	Weak transcription	Fetal Brain Female	brain
7	chr6:132625200-132627800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:132626600-132651400	Weak transcription	Fetal Stomach	stomach
9	chr6:132626800-132628000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:132626800-132631400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:132627000-132631800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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