Variant report

Variant	rs9375871
Chromosome Location	chr6:132626410-132626411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17718924	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2206064	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2223373	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2235435	0.98[ASN][1000 genomes]
rs7762654	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9385599	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9388980	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9388981	1.00[ASN][1000 genomes]
rs9399016	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9399018	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9493284	0.98[ASN][1000 genomes]
rs9493286	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132615800-132635400	Weak transcription	Fetal Lung	lung
2	chr6:132617200-132627600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:132618400-132631600	Weak transcription	Fetal Kidney	kidney
4	chr6:132618800-132634600	Weak transcription	NHDF-Ad	bronchial
5	chr6:132624600-132627800	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:132625000-132627600	Weak transcription	Fetal Brain Female	brain
7	chr6:132625200-132626800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:132625200-132627000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:132625200-132627800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:132625800-132626600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:132626000-132626600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:132626200-132626600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:132626200-132626600	Enhancers	Ovary	ovary
14	chr6:132626200-132626800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:132626200-132626800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:132626200-132626800	Enhancers	Spleen	Spleen
17	chr6:132626200-132627000	Enhancers	Osteobl	bone
18	chr6:132626400-132626600	Genic enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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