Variant report

Variant	rs9399016
Chromosome Location	chr6:132624907-132624908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17718924	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2206064	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2223373	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2235435	0.95[ASN][1000 genomes]
rs7762654	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9375871	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9385599	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9388980	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9388981	0.97[ASN][1000 genomes]
rs9399018	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9493284	0.95[ASN][1000 genomes]
rs9493286	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132611000-132625600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:132612600-132626400	Weak transcription	Fetal Stomach	stomach
3	chr6:132615800-132635400	Weak transcription	Fetal Lung	lung
4	chr6:132616200-132625200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:132616600-132625200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:132617200-132627600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:132617600-132626200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:132618400-132631600	Weak transcription	Fetal Kidney	kidney
9	chr6:132618600-132626200	Weak transcription	Osteobl	bone
10	chr6:132618800-132634600	Weak transcription	NHDF-Ad	bronchial
11	chr6:132619000-132625200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:132623200-132625200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:132624600-132625800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:132624600-132627800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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