Variant report

Variant	rs9375880
Chromosome Location	chr6:132705804-132705805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2275393	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2275395	0.96[ASN][1000 genomes]
rs2275396	0.90[ASN][1000 genomes]
rs4895936	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4897579	0.93[ASN][1000 genomes]
rs58101102	0.96[ASN][1000 genomes]
rs58579517	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73547914	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9321341	0.95[ASN][1000 genomes]
rs9375879	0.93[ASN][1000 genomes]
rs9375882	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886675	chr6:132683762-132730947	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604668	chr6:132687248-132731358	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604669	chr6:132702249-132712307	Enhancers Weak transcription Strong transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv5480	chr6:132705614-132714040	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132692600-132709200	Weak transcription	Fetal Kidney	kidney
2	chr6:132693200-132709400	Weak transcription	Fetal Lung	lung
3	chr6:132701600-132709000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:132701600-132709400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:132701600-132713200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:132702000-132709400	Weak transcription	Osteobl	bone
7	chr6:132704200-132712800	Weak transcription	HSMMtube	muscle
8	chr6:132705400-132706400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:132705400-132706400	Strong transcription	NHDF-Ad	bronchial
10	chr6:132705800-132706400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:132705800-132706400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links