Variant report

Variant	rs9388984
Chromosome Location	chr6:132665870-132665871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2275395	0.83[CHB][hapmap];0.86[EUR][1000 genomes]
rs2275396	0.86[EUR][1000 genomes]
rs4897579	0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs58101102	0.86[EUR][1000 genomes]
rs9321341	0.86[EUR][1000 genomes]
rs9375873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375874	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9375875	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9375879	0.86[EUR][1000 genomes]
rs9385600	0.83[CHB][hapmap]
rs9388983	0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9402397	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132644400-132675400	Weak transcription	Fetal Lung	lung
2	chr6:132656000-132676000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:132656800-132675400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:132656800-132676000	Weak transcription	NHDF-Ad	bronchial
5	chr6:132658200-132674000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:132658200-132674800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:132662800-132669200	Weak transcription	Fetal Kidney	kidney
8	chr6:132665400-132666400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
9	chr6:132665600-132666000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:132665600-132666200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:132665600-132666400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:132665800-132666200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:132665800-132666200	ZNF genes & repeats	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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