Variant report

Variant	rs9375875
Chromosome Location	chr6:132685211-132685212
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132684501..132686095-chr6:132688658..132690202,2	K562	blood:
2	chr6:132684114..132687099-chr6:132691049..132693602,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2275395	0.86[EUR][1000 genomes]
rs2275396	0.86[EUR][1000 genomes]
rs4897579	0.86[EUR][1000 genomes]
rs58101102	0.86[EUR][1000 genomes]
rs9321341	0.86[EUR][1000 genomes]
rs9375873	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9375874	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9375879	0.86[EUR][1000 genomes]
rs9388983	1.00[EUR][1000 genomes]
rs9388984	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9402397	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv886675	chr6:132683762-132730947	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132676400-132686400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:132677200-132688600	Weak transcription	Osteobl	bone
3	chr6:132677400-132701200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:132678600-132690400	Weak transcription	NH-A	brain
5	chr6:132679000-132690000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:132682000-132692200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:132682200-132686400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:132682200-132705800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:132682400-132686000	Weak transcription	Fetal Stomach	stomach
10	chr6:132682400-132686600	Weak transcription	HSMM	muscle
11	chr6:132682600-132685800	Weak transcription	Primary B cells from cord blood	blood
12	chr6:132682800-132685600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:132683600-132688000	Enhancers	Fetal Lung	lung
14	chr6:132684200-132686400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:132684200-132686400	Weak transcription	NHLF	lung
16	chr6:132684400-132685600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:132684800-132685600	Weak transcription	NHDF-Ad	bronchial
18	chr6:132684800-132686200	Enhancers	GM12878-XiMat	blood
19	chr6:132685000-132686600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:132685200-132685600	Weak transcription	Fetal Kidney	kidney

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