Variant report

Variant	rs58587119
Chromosome Location	chr4:175344597-175344598
allele	-/GT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr4:175344493-175344762	H1-hESC	embryonic stem cell:	n/a	n/a
2	USF1	chr4:175344499-175344705	A549	lung:	n/a	n/a
3	RCOR1	chr4:175344415-175345182	K562	blood:	n/a	n/a
4	JUN	chr4:175344187-175345125	K562	blood:	n/a	chr4:175344961-175344972 chr4:175344959-175344968 chr4:175344958-175344969
5	TBL1XR1	chr4:175344158-175345044	K562	blood:	n/a	n/a
6	SP1	chr4:175344303-175345247	A549	lung:	n/a	n/a
7	IRF1	chr4:175344029-175345031	K562	blood:	n/a	chr4:175344336-175344348 chr4:175344334-175344348
8	MAX	chr4:175344502-175345129	K562	blood:	n/a	chr4:175344960-175344969
9	USF2	chr4:175344503-175344744	GM12878	blood:	n/a	chr4:175344629-175344640
10	USF1	chr4:175344480-175344712	A549	lung:	n/a	n/a
11	MAFK	chr4:175344380-175345096	Hela-S3	cervix:	n/a	n/a
12	SMARCB1	chr4:175344016-175344996	K562	blood:	n/a	n/a
13	NFIC	chr4:175344146-175344843	ECC-1	luminal epithelium:	n/a	chr4:175344443-175344459 chr4:175344433-175344461
14	USF1	chr4:175344378-175345086	K562	blood:	n/a	n/a
15	NR2F2	chr4:175344309-175345172	K562	blood:	n/a	n/a
16	POLR2A	chr4:175344206-175344667	SK-N-MC	brain:	n/a	n/a
17	SPI1	chr4:175343939-175344698	HL-60	blood:	n/a	chr4:175344234-175344241 chr4:175344230-175344243
18	MYC	chr4:175344105-175345088	K562	blood:	n/a	chr4:175344960-175344969
19	IRF1	chr4:175344231-175344981	K562	blood:	n/a	chr4:175344336-175344348 chr4:175344334-175344348
20	STAT3	chr4:175344453-175345191	MCF10A-Er-Src	breast:	n/a	chr4:175344959-175344968
21	USF2	chr4:175344439-175344750	K562	blood:	n/a	chr4:175344629-175344640
22	USF1	chr4:175344450-175345058	A549	lung:	n/a	n/a
23	FOS	chr4:175344543-175345197	MCF10A-Er-Src	breast:	n/a	chr4:175344961-175344972 chr4:175344959-175344968 chr4:175344958-175344969
24	USF1	chr4:175344425-175344790	ECC-1	luminal epithelium:	n/a	n/a
25	EP300	chr4:175344591-175345258	A549	lung:	n/a	n/a
26	CUX1	chr4:175344086-175344996	K562	blood:	n/a	n/a
27	CCNT2	chr4:175344042-175345033	K562	blood:	n/a	chr4:175344654-175344674
28	FOS	chr4:175344403-175345234	MCF10A-Er-Src	breast:	n/a	chr4:175344961-175344972 chr4:175344959-175344968 chr4:175344958-175344969
29	NFIC	chr4:175344114-175344793	SK-N-SH	brain:	n/a	chr4:175344443-175344459 chr4:175344433-175344461
30	KAP1	chr4:175344319-175345085	U2OS	brain:	n/a	n/a
31	NR2F2	chr4:175344429-175344769	K562	blood:	n/a	n/a
32	BHLHE40	chr4:175344143-175345124	K562	blood:	n/a	n/a
33	RAD21	chr4:175344577-175345199	Hela-S3	cervix:	n/a	n/a
34	FOS	chr4:175344470-175345249	MCF10A-Er-Src	breast:	n/a	chr4:175344961-175344972 chr4:175344959-175344968 chr4:175344958-175344969
35	MAZ	chr4:175344129-175345038	K562	blood:	n/a	chr4:175344960-175344969
36	USF1	chr4:175344412-175345132	A549	lung:	n/a	n/a
37	ZNF143	chr4:175344301-175344680	K562	blood:	n/a	n/a
38	CEBPB	chr4:175344367-175344860	K562	blood:	n/a	n/a
39	USF1	chr4:175344504-175344753	SK-N-SH	brain:	n/a	n/a
40	USF1	chr4:175344484-175344750	SK-N-SH_RA	brain:	n/a	n/a
41	MAX	chr4:175344278-175345182	Hela-S3	cervix:	n/a	chr4:175344960-175344969
42	SMARCA4	chr4:175343589-175344967	K562	blood:	n/a	n/a
43	FOSL2	chr4:175344251-175345220	A549	lung:	n/a	chr4:175344961-175344972 chr4:175344959-175344968 chr4:175344958-175344969
44	ZMIZ1	chr4:175344469-175345057	K562	blood:	n/a	n/a
45	TAL1	chr4:175344080-175345072	K562	blood:	n/a	chr4:175344654-175344672
46	CEBPB	chr4:175344412-175344700	K562	blood:	n/a	n/a
47	GTF2F1	chr4:175344466-175345184	Hela-S3	cervix:	n/a	n/a
48	EP300	chr4:175343981-175345090	K562	blood:	n/a	chr4:175344378-175344385 chr4:175344416-175344430 chr4:175344232-175344246
49	USF1	chr4:175344501-175344789	ECC-1	luminal epithelium:	n/a	n/a
50	MAX	chr4:175344351-175345287	A549	lung:	n/a	chr4:175344960-175344969

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:175341767..175344655-chr4:175574343..175576640,2	K562	blood:
2	chr4:175342786..175344647-chr4:175348562..175350171,2	K562	blood:

Variant related genes	Relation type
MIR4276	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4499680	0.81[EUR][1000 genomes]
rs4554044	0.80[EUR][1000 genomes]
rs4593102	0.93[EUR][1000 genomes]
rs6553793	0.87[EUR][1000 genomes]
rs66773185	0.93[EUR][1000 genomes]
rs67034472	0.81[EUR][1000 genomes]
rs6833543	0.81[EUR][1000 genomes]
rs72704105	0.81[EUR][1000 genomes]
rs7677995	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016910	chr4:174952788-175349057	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537363	chr4:174952788-175349057	Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv596234	chr4:175053051-175361437	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175340600-175345800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr4:175340600-175345800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:175340800-175344600	Weak transcription	Placenta	Placenta
4	chr4:175342000-175345400	Enhancers	Primary T cells from cord blood	blood
5	chr4:175342200-175344800	Weak transcription	Fetal Thymus	thymus
6	chr4:175342800-175345000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:175342800-175345200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr4:175343800-175345000	Enhancers	Hela-S3	cervix
9	chr4:175344000-175344600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr4:175344000-175344600	Enhancers	Brain Angular Gyrus	brain
11	chr4:175344000-175344800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr4:175344000-175345000	Enhancers	Adipose Nuclei	Adipose
13	chr4:175344000-175345000	Enhancers	Liver	Liver
14	chr4:175344000-175345000	Enhancers	Colon Smooth Muscle	Colon
15	chr4:175344000-175345000	Flanking Active TSS	A549	lung
16	chr4:175344000-175345000	Enhancers	GM12878-XiMat	blood
17	chr4:175344000-175345200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:175344000-175345200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:175344000-175345200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:175344000-175345200	Flanking Active TSS	K562	blood
21	chr4:175344000-175345800	Enhancers	HMEC	breast
22	chr4:175344000-175346000	Enhancers	Stomach Mucosa	stomach
23	chr4:175344200-175344600	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr4:175344200-175344600	Enhancers	Brain Cingulate Gyrus	brain
25	chr4:175344200-175344600	Active TSS	Brain Hippocampus Middle	brain
26	chr4:175344200-175344800	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr4:175344200-175344800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr4:175344200-175344800	Enhancers	NHEK	skin
29	chr4:175344200-175345000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr4:175344200-175345200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:175344200-175345200	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr4:175344200-175345200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:175344200-175345200	Enhancers	Muscle Satellite Cultured Cells	--
34	chr4:175344200-175345200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr4:175344200-175345200	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr4:175344200-175345200	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr4:175344400-175344600	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
38	chr4:175344400-175344600	Active TSS	Right Atrium	heart
39	chr4:175344400-175344800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr4:175344400-175344800	Enhancers	Fetal Lung	lung
41	chr4:175344400-175344800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr4:175344400-175344800	Enhancers	NH-A	brain
43	chr4:175344400-175345000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:175344400-175345000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr4:175344400-175345000	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr4:175344400-175345000	Enhancers	Fetal Heart	heart
47	chr4:175344400-175345000	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr4:175344400-175345000	Enhancers	Fetal Stomach	stomach
49	chr4:175344400-175345000	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr4:175344400-175345000	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links