Variant report

Variant	rs66773185
Chromosome Location	chr4:175355289-175355290
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11936682	1.00[ASN][1000 genomes]
rs1922385	1.00[ASN][1000 genomes]
rs2244288	0.81[EUR][1000 genomes]
rs2555624	0.83[EUR][1000 genomes]
rs2555634	0.83[EUR][1000 genomes]
rs4499680	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4554044	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4593102	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4624634	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58587119	0.93[EUR][1000 genomes]
rs6553793	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67034472	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6821522	1.00[ASN][1000 genomes]
rs6833543	0.83[EUR][1000 genomes]
rs72704105	1.00[ASN][1000 genomes]
rs72704109	1.00[ASN][1000 genomes]
rs7660879	0.83[EUR][1000 genomes]
rs7677995	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596234	chr4:175053051-175361437	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175350000-175358400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:175352000-175357200	Weak transcription	A549	lung
3	chr4:175355200-175355600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:175355200-175356200	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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