Variant report

Variant	rs11936682
Chromosome Location	chr4:175364418-175364419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10520282	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17052152	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1922385	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4499680	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4554044	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4593102	1.00[ASN][1000 genomes]
rs4624634	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6553793	1.00[ASN][1000 genomes]
rs66773185	1.00[ASN][1000 genomes]
rs67034472	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6821522	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704105	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704109	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704112	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72704116	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72704127	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7677995	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175356000-175370800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:175359600-175367200	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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