Variant report

Variant	rs72704112
Chromosome Location	chr4:175367586-175367587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10520282	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11936682	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17052152	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1922385	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2555624	1.00[ASN][1000 genomes]
rs2555634	1.00[ASN][1000 genomes]
rs4499680	0.83[EUR][1000 genomes]
rs4554044	0.82[EUR][1000 genomes]
rs67034472	0.83[EUR][1000 genomes]
rs6821522	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6828850	0.86[ASN][1000 genomes]
rs72704105	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72704109	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72704116	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704127	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7660879	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175356000-175370800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:175367400-175368000	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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