Variant report

Variant	rs17052152
Chromosome Location	chr4:175382530-175382531
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10520282	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11936682	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1922385	0.83[EUR][1000 genomes]
rs2555624	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2555634	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4624634	0.80[CEU][hapmap]
rs6821522	0.89[EUR][1000 genomes]
rs6828850	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704109	0.88[EUR][1000 genomes]
rs72704112	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72704116	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72704127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7660879	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7673685	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175371800-175382600	Weak transcription	Small Intestine	intestine
2	chr4:175374600-175382800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:175381200-175383600	Enhancers	Hela-S3	cervix
4	chr4:175381400-175382800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:175381400-175383200	Enhancers	Colon Smooth Muscle	Colon
6	chr4:175381400-175383600	Enhancers	HepG2	liver
7	chr4:175381600-175383400	Enhancers	NH-A	brain
8	chr4:175381600-175383600	Enhancers	Fetal Intestine Large	intestine
9	chr4:175381600-175383600	Enhancers	Fetal Intestine Small	intestine
10	chr4:175381600-175383600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr4:175382000-175382600	Weak transcription	Stomach Mucosa	stomach
12	chr4:175382400-175383000	Enhancers	Duodenum Mucosa	Duodenum
13	chr4:175382400-175383000	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr4:175382400-175383200	Enhancers	Gastric	stomach
15	chr4:175382400-175383600	Flanking Active TSS	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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