Variant report

Variant	rs2555634
Chromosome Location	chr4:175370493-175370494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10520282	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17052152	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2244288	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2555624	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4593102	0.84[EUR][1000 genomes]
rs6553793	0.90[EUR][1000 genomes]
rs66773185	0.83[EUR][1000 genomes]
rs6828850	0.86[ASN][1000 genomes]
rs72704112	1.00[ASN][1000 genomes]
rs72704116	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704127	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7660879	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677995	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175356000-175370800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:175368800-175374800	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr4:175369200-175372000	Enhancers	Fetal Intestine Large	intestine
4	chr4:175369200-175374800	Enhancers	Rectal Smooth Muscle	rectum
5	chr4:175369400-175373000	Enhancers	Stomach Mucosa	stomach
6	chr4:175369400-175373800	Enhancers	Colon Smooth Muscle	Colon
7	chr4:175369800-175371000	Enhancers	Esophagus	oesophagus
8	chr4:175369800-175371000	Weak transcription	A549	lung
9	chr4:175369800-175371200	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr4:175369800-175371800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr4:175370000-175371600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:175370000-175373200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:175370000-175373600	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr4:175370200-175371200	Weak transcription	Fetal Intestine Small	intestine
15	chr4:175370400-175371800	Enhancers	Small Intestine	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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