Variant report

Variant	rs7677995
Chromosome Location	chr4:175362802-175362803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11936682	1.00[ASN][1000 genomes]
rs1922385	1.00[ASN][1000 genomes]
rs2244288	0.88[EUR][1000 genomes]
rs2555624	0.90[EUR][1000 genomes]
rs2555634	0.90[EUR][1000 genomes]
rs4499680	1.00[ASN][1000 genomes]
rs4554044	1.00[ASN][1000 genomes]
rs4593102	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4624634	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs58587119	0.87[EUR][1000 genomes]
rs6553793	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66773185	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67034472	1.00[ASN][1000 genomes]
rs6821522	1.00[ASN][1000 genomes]
rs72704105	1.00[ASN][1000 genomes]
rs72704109	1.00[ASN][1000 genomes]
rs7660879	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175356000-175370800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:175359600-175367200	Weak transcription	A549	lung
3	chr4:175362800-175363200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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