Variant report

Variant	rs2555624
Chromosome Location	chr4:175378238-175378239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10520282	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17052152	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2244288	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2555634	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4593102	0.84[EUR][1000 genomes]
rs6553793	0.90[EUR][1000 genomes]
rs66773185	0.83[EUR][1000 genomes]
rs6828850	0.86[ASN][1000 genomes]
rs72704112	1.00[ASN][1000 genomes]
rs72704116	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704127	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7660879	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677995	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175371000-175378400	Weak transcription	Esophagus	oesophagus
2	chr4:175371800-175382600	Weak transcription	Small Intestine	intestine
3	chr4:175374200-175378800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:175374600-175382800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:175376000-175379400	Enhancers	Colon Smooth Muscle	Colon
6	chr4:175376200-175378800	Weak transcription	Pancreas	Pancrea
7	chr4:175376400-175381600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:175376600-175381600	Weak transcription	Fetal Intestine Small	intestine
9	chr4:175377000-175378400	Enhancers	Fetal Stomach	stomach
10	chr4:175377000-175379600	Enhancers	Rectal Smooth Muscle	rectum
11	chr4:175377800-175378600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:175378000-175378600	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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