Variant report

Variant	rs72704116
Chromosome Location	chr4:175369969-175369970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10520282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11936682	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17052152	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1922385	0.84[EUR][1000 genomes]
rs2244288	0.80[EUR][1000 genomes]
rs2555624	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2555634	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6821522	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6828850	0.86[ASN][1000 genomes]
rs72704105	0.80[EUR][1000 genomes]
rs72704109	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72704112	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704127	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7660879	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175356000-175370800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:175368800-175374800	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr4:175369000-175370000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:175369200-175372000	Enhancers	Fetal Intestine Large	intestine
5	chr4:175369200-175374800	Enhancers	Rectal Smooth Muscle	rectum
6	chr4:175369400-175373000	Enhancers	Stomach Mucosa	stomach
7	chr4:175369400-175373800	Enhancers	Colon Smooth Muscle	Colon
8	chr4:175369600-175370000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:175369600-175370000	Enhancers	Duodenum Mucosa	Duodenum
10	chr4:175369600-175370200	Enhancers	Fetal Intestine Small	intestine
11	chr4:175369800-175370000	Enhancers	Small Intestine	intestine
12	chr4:175369800-175371000	Enhancers	Esophagus	oesophagus
13	chr4:175369800-175371000	Weak transcription	A549	lung
14	chr4:175369800-175371200	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr4:175369800-175371800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links