Variant report

Variant	rs58600898
Chromosome Location	chr12:62314610-62314611
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11174243	1.00[EUR][1000 genomes]
rs11174248	1.00[EUR][1000 genomes]
rs12305044	1.00[EUR][1000 genomes]
rs12306906	1.00[EUR][1000 genomes]
rs12307540	1.00[EUR][1000 genomes]
rs12309121	1.00[EUR][1000 genomes]
rs12309224	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12320150	1.00[EUR][1000 genomes]
rs3847912	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73310271	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73310273	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096113	1.00[EUR][1000 genomes]
rs7962524	1.00[EUR][1000 genomes]
rs7964628	1.00[EUR][1000 genomes]
rs7977306	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62313000-62315000	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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