Variant report

Variant	rs58610160
Chromosome Location	chr5:106483532-106483533
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55714506	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56127941	0.82[AFR][1000 genomes]
rs56413244	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59026072	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59563991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59911789	0.88[AFR][1000 genomes]
rs6596728	0.96[AFR][1000 genomes]
rs73777962	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777987	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73780103	0.86[AFR][1000 genomes]
rs73780259	0.87[AFR][1000 genomes]
rs73780261	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7703722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7704920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7732065	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv599332	chr5:106403516-106502006	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2752056	chr5:106422649-106563101	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106481400-106483800	Enhancers	Fetal Lung	lung
2	chr5:106482800-106483600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:106482800-106483600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr5:106483000-106483600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:106483000-106483600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:106483200-106483800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:106483200-106484000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:106483400-106483600	Flanking Active TSS	Ovary	ovary

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