Variant report

Variant	rs73780261
Chromosome Location	chr5:106449055-106449056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55714506	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56413244	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58610160	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59026072	1.00[AMR][1000 genomes]
rs59563991	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6596728	0.86[AFR][1000 genomes]
rs73777962	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777965	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777968	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777972	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777977	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777981	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777983	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777987	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73780259	0.96[AFR][1000 genomes]
rs7703722	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7704920	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7732065	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv599332	chr5:106403516-106502006	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2752056	chr5:106422649-106563101	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106444200-106452600	Weak transcription	Fetal Heart	heart
2	chr5:106448400-106454000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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