Variant report

Variant	rs73777962
Chromosome Location	chr5:106458388-106458389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55714506	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56127941	0.81[AFR][1000 genomes]
rs56413244	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58610160	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59026072	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59563991	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59911789	0.86[AFR][1000 genomes]
rs6596728	0.94[AFR][1000 genomes]
rs73777965	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777968	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777972	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777977	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777981	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777983	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777987	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73780103	0.84[AFR][1000 genomes]
rs73780259	0.89[AFR][1000 genomes]
rs73780261	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7703722	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7704920	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7732065	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv599332	chr5:106403516-106502006	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2752056	chr5:106422649-106563101	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106454800-106458600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:106455400-106458800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:106455400-106459200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr5:106456200-106458800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:106456400-106458800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:106456400-106458800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:106456800-106459600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:106458200-106463600	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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