Variant report

Variant	rs58635658
Chromosome Location	chr4:98470781-98470782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1508458	1.00[ASN][1000 genomes]
rs1508459	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1508468	1.00[ASN][1000 genomes]
rs1508471	1.00[ASN][1000 genomes]
rs17026779	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17026792	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17026828	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17026847	1.00[ASN][1000 genomes]
rs17026850	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17026853	1.00[EUR][1000 genomes]
rs17026871	1.00[EUR][1000 genomes]
rs17026893	1.00[EUR][1000 genomes]
rs1817365	1.00[EUR][1000 genomes]
rs1911789	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2078362	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2136082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4324551	1.00[ASN][1000 genomes]
rs55901496	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56880249	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56945629	1.00[ASN][1000 genomes]
rs57593663	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57750317	1.00[ASN][1000 genomes]
rs58510840	1.00[ASN][1000 genomes]
rs58864230	1.00[ASN][1000 genomes]
rs58996528	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59158891	1.00[ASN][1000 genomes]
rs59172540	1.00[ASN][1000 genomes]
rs59606962	1.00[ASN][1000 genomes]
rs60217712	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60804385	1.00[ASN][1000 genomes]
rs61171414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61246213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61456001	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72889082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890817	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890900	1.00[ASN][1000 genomes]
rs72892812	1.00[ASN][1000 genomes]
rs7658086	1.00[EUR][1000 genomes]
rs7692593	0.89[ASN][1000 genomes]
rs997657	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879641	chr4:98317295-98506794	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879642	chr4:98317295-98569259	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879643	chr4:98317295-99065480	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv1833751	chr4:98330337-98471647	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv879644	chr4:98333918-98506794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv830016	chr4:98360907-98550751	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv879645	chr4:98371858-98497853	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv879646	chr4:98386631-98569259	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv868914	chr4:98416047-98969285	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv594932	chr4:98425582-98595080	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1012612	chr4:98433491-98949873	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv879647	chr4:98435389-98569259	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3450735	chr4:98446823-98472678	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3502787	chr4:98459061-98825579	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv3502788	chr4:98459061-98825579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98466800-98478600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:98470600-98472800	Enhancers	Dnd41	blood

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