Variant report

Variant	rs58652455
Chromosome Location	chr12:106495536-106495537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106491668..106493233-chr12:106494081..106496361,2	MCF-7	breast:
2	chr12:106494133..106496771-chr12:106501271..106503780,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17038107	0.88[EUR][1000 genomes]
rs17038109	0.94[EUR][1000 genomes]
rs17038111	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17041576	0.94[EUR][1000 genomes]
rs7136283	0.85[EUR][1000 genomes]
rs73397139	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73397141	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73397143	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106458800-106500200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:106461800-106499600	Weak transcription	Fetal Intestine Large	intestine
3	chr12:106469000-106499400	Weak transcription	Fetal Intestine Small	intestine
4	chr12:106485200-106500400	Weak transcription	HMEC	breast
5	chr12:106485400-106500800	Weak transcription	Lung	lung
6	chr12:106485600-106496200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:106485600-106500600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr12:106487400-106499400	Weak transcription	Brain Germinal Matrix	brain
9	chr12:106487600-106500200	Weak transcription	NHLF	lung
10	chr12:106488600-106495600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr12:106490000-106496800	Weak transcription	Aorta	Aorta
12	chr12:106490600-106498200	Weak transcription	Pancreas	Pancrea
13	chr12:106490800-106499600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:106491000-106496600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr12:106491000-106499600	Weak transcription	Fetal Kidney	kidney
16	chr12:106491200-106499800	Strong transcription	HSMM	muscle
17	chr12:106491200-106500000	Weak transcription	Fetal Lung	lung
18	chr12:106491200-106500800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr12:106491400-106496600	Weak transcription	NHDF-Ad	bronchial
20	chr12:106491400-106499600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr12:106491600-106495600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr12:106491600-106496000	Weak transcription	NH-A	brain
23	chr12:106491600-106497200	Strong transcription	Osteobl	bone
24	chr12:106491600-106497600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr12:106491800-106499600	Weak transcription	Ovary	ovary
26	chr12:106491800-106500400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr12:106492000-106498200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr12:106492000-106504400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr12:106492600-106497400	Weak transcription	Psoas Muscle	Psoas
30	chr12:106492600-106499600	Weak transcription	Fetal Brain Male	brain
31	chr12:106492600-106500600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr12:106492600-106500800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr12:106492800-106500000	Weak transcription	NHEK	skin
34	chr12:106492800-106500600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr12:106493000-106495800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr12:106493200-106499600	Weak transcription	Brain Anterior Caudate	brain
37	chr12:106493200-106500000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr12:106493400-106495600	Weak transcription	Brain Hippocampus Middle	brain
39	chr12:106493400-106496800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr12:106493400-106499200	Weak transcription	Brain Substantia Nigra	brain
41	chr12:106493400-106499600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr12:106493400-106499800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr12:106493400-106500000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr12:106493400-106500200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr12:106493400-106500200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr12:106493400-106500200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr12:106493400-106512400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr12:106493600-106499400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr12:106493600-106500000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr12:106493600-106500200	Weak transcription	Liver	Liver

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