Variant report

Variant	rs7136283
Chromosome Location	chr12:106460856-106460857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17038107	0.91[EUR][1000 genomes]
rs17038109	0.85[EUR][1000 genomes]
rs17038111	0.85[EUR][1000 genomes]
rs17041576	0.85[EUR][1000 genomes]
rs58652455	0.85[EUR][1000 genomes]
rs73397141	0.91[EUR][1000 genomes]
rs73397143	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106452400-106468600	Weak transcription	Psoas Muscle	Psoas
2	chr12:106452800-106463600	Weak transcription	NHDF-Ad	bronchial
3	chr12:106452800-106472200	Weak transcription	HMEC	breast
4	chr12:106452800-106474000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr12:106454000-106463400	Weak transcription	Fetal Brain Male	brain
6	chr12:106456400-106461200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:106456400-106461200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:106456400-106461600	Weak transcription	Fetal Heart	heart
9	chr12:106456400-106465200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:106456400-106465400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:106456400-106468000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:106456600-106468800	Weak transcription	Colonic Mucosa	Colon
13	chr12:106457200-106461000	Weak transcription	Fetal Intestine Large	intestine
14	chr12:106457600-106462600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr12:106457600-106463800	Strong transcription	Liver	Liver
16	chr12:106457600-106465000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr12:106457600-106465000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr12:106457600-106465200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr12:106457800-106461400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr12:106458200-106461000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr12:106458200-106468600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr12:106458200-106471800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr12:106458400-106461400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr12:106458400-106462600	Strong transcription	Brain Anterior Caudate	brain
25	chr12:106458400-106463200	Weak transcription	Fetal Kidney	kidney
26	chr12:106458400-106464600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr12:106458400-106465200	Strong transcription	Brain Germinal Matrix	brain
28	chr12:106458400-106465200	Strong transcription	Brain Hippocampus Middle	brain
29	chr12:106458400-106468600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr12:106458600-106461600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr12:106458600-106463000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr12:106458600-106465200	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr12:106458600-106476800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr12:106458800-106462800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr12:106458800-106465000	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr12:106458800-106465400	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr12:106458800-106500200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr12:106459000-106461200	Enhancers	HUVEC	blood vessel
39	chr12:106459000-106462400	Genic enhancers	Right Ventricle	heart
40	chr12:106459000-106464800	Strong transcription	Fetal Muscle Trunk	muscle
41	chr12:106459200-106461400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
42	chr12:106459200-106462200	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr12:106459200-106462600	Strong transcription	Aorta	Aorta
44	chr12:106459200-106465000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr12:106459200-106465200	Strong transcription	Osteobl	bone
46	chr12:106459200-106466200	Strong transcription	NH-A	brain
47	chr12:106459400-106461800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr12:106459400-106462400	Genic enhancers	Left Ventricle	heart
49	chr12:106459400-106462400	Strong transcription	NHEK	skin
50	chr12:106459400-106462800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links