Variant report

Variant	rs58653611
Chromosome Location	chr3:115972788-115972789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16824895	1.00[AMR][1000 genomes]
rs55812595	1.00[AMR][1000 genomes]
rs56288785	1.00[AMR][1000 genomes]
rs58682876	1.00[AMR][1000 genomes]
rs73858601	1.00[AMR][1000 genomes]
rs73859213	1.00[AMR][1000 genomes]
rs73859214	1.00[AMR][1000 genomes]
rs73859216	1.00[AMR][1000 genomes]
rs73859217	1.00[AMR][1000 genomes]
rs73861417	1.00[AMR][1000 genomes]
rs73861419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73861420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73861669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73861676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv1808373	chr3:115952799-115984473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115962400-115983200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:115965800-115983200	Weak transcription	Fetal Brain Male	brain
3	chr3:115969800-115973000	Enhancers	Brain Substantia Nigra	brain
4	chr3:115970600-115972800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:115970600-115973200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:115970800-115973000	Enhancers	Brain Hippocampus Middle	brain
7	chr3:115970800-115974800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:115970800-115976800	Enhancers	Colon Smooth Muscle	Colon
9	chr3:115971000-115973000	Enhancers	Brain Anterior Caudate	brain
10	chr3:115971200-115973400	Weak transcription	Fetal Lung	lung
11	chr3:115971200-115975000	Weak transcription	Fetal Kidney	kidney
12	chr3:115971200-115984800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:115971400-115975800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:115971600-115975800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:115971800-115975600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:115972400-115972800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr3:115972400-115972800	Weak transcription	Brain Angular Gyrus	brain
18	chr3:115972400-115974200	Weak transcription	Fetal Stomach	stomach
19	chr3:115972400-115976000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:115972600-115972800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr3:115972600-115972800	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr3:115972600-115973200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr3:115972600-115974400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr3:115972600-115975400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr3:115972600-115975600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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