Variant report

Variant	rs73858601
Chromosome Location	chr3:115953867-115953868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16824895	1.00[AMR][1000 genomes]
rs55812595	1.00[AMR][1000 genomes]
rs56288785	1.00[AMR][1000 genomes]
rs58653611	1.00[AMR][1000 genomes]
rs58682876	1.00[AMR][1000 genomes]
rs73859213	1.00[AMR][1000 genomes]
rs73859214	1.00[AMR][1000 genomes]
rs73861417	1.00[AMR][1000 genomes]
rs73861419	1.00[AMR][1000 genomes]
rs73861420	1.00[AMR][1000 genomes]
rs73861669	1.00[AMR][1000 genomes]
rs73861676	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv1808373	chr3:115952799-115984473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115949600-115956200	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:115949600-115965400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:115951200-115955400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:115953200-115956000	Weak transcription	Brain Anterior Caudate	brain
5	chr3:115953200-115956000	Weak transcription	Brain Substantia Nigra	brain
6	chr3:115953200-115957800	Weak transcription	Brain Angular Gyrus	brain
7	chr3:115953200-115957800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:115953200-115959200	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:115953200-115965400	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links