Variant report

Variant	rs73861417
Chromosome Location	chr3:116006296-116006297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16824895	1.00[AMR][1000 genomes]
rs55812595	1.00[AMR][1000 genomes]
rs56288785	1.00[AMR][1000 genomes]
rs58653611	1.00[AMR][1000 genomes]
rs58682876	1.00[AMR][1000 genomes]
rs73858601	1.00[AMR][1000 genomes]
rs73859213	1.00[AMR][1000 genomes]
rs73859214	1.00[AMR][1000 genomes]
rs73859216	1.00[AMR][1000 genomes]
rs73859217	1.00[AMR][1000 genomes]
rs73861419	1.00[AMR][1000 genomes]
rs73861420	1.00[AMR][1000 genomes]
rs73861669	1.00[AMR][1000 genomes]
rs73861676	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv3957	chr3:115986950-116032625	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115997200-116017200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:115999400-116014000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:116000600-116006400	Weak transcription	Brain Anterior Caudate	brain
4	chr3:116003800-116007200	Enhancers	Colon Smooth Muscle	Colon
5	chr3:116004600-116007600	Enhancers	Rectal Smooth Muscle	rectum
6	chr3:116005000-116007600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:116005200-116006800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:116005200-116007600	Enhancers	Fetal Brain Male	brain
9	chr3:116005200-116008400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:116005600-116007000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:116006000-116006600	Enhancers	Brain Substantia Nigra	brain
12	chr3:116006000-116007000	Enhancers	Brain Cingulate Gyrus	brain
13	chr3:116006000-116007000	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr3:116006000-116007400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr3:116006000-116007600	Enhancers	Brain Hippocampus Middle	brain
16	chr3:116006000-116008400	Enhancers	Fetal Brain Female	brain
17	chr3:116006000-116009200	Enhancers	Brain Germinal Matrix	brain
18	chr3:116006200-116006400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:116006200-116007200	Enhancers	Brain Angular Gyrus	brain
20	chr3:116006200-116008200	Enhancers	Fetal Lung	lung
21	chr3:116006200-116009000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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