Variant report

Variant	rs586563
Chromosome Location	chr9:102195533-102195534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102189382..102190948-chr9:102193219..102195799,2	K562	blood:
2	chr9:102183276..102185319-chr9:102193925..102196644,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10116784	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10760689	0.80[ASN][1000 genomes]
rs10988808	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10988815	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10988820	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10988821	0.93[ASN][1000 genomes]
rs4743346	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4743350	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs608510	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs644547	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7042668	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7042691	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7855403	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9886848	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv527165	chr9:102194921-102214169	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102192200-102197600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:102192800-102195600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:102192800-102195800	Weak transcription	Lung	lung
4	chr9:102193200-102195600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr9:102193200-102195600	Weak transcription	Spleen	Spleen
6	chr9:102193200-102195800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:102193400-102197800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:102193600-102195800	Weak transcription	Osteobl	bone
9	chr9:102194000-102195600	Weak transcription	NH-A	brain
10	chr9:102194000-102195600	Weak transcription	NHEK	skin
11	chr9:102194200-102199800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:102194400-102195600	Weak transcription	Fetal Heart	heart
13	chr9:102194400-102195600	Weak transcription	NHLF	lung
14	chr9:102194600-102195600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:102195000-102196600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr9:102195000-102196800	Enhancers	HUVEC	blood vessel
17	chr9:102195200-102196800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr9:102195200-102196800	Enhancers	GM12878-XiMat	blood
19	chr9:102195200-102197000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:102195400-102196400	Enhancers	A549	lung
21	chr9:102195400-102196600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr9:102195400-102196600	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr9:102195400-102196800	Enhancers	Hela-S3	cervix
24	chr9:102195400-102197000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:102195400-102197000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:102195400-102202800	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links