Variant report

Variant	rs10760689
Chromosome Location	chr9:102271662-102271663
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs586563	0.80[ASN][1000 genomes]
rs608510	0.86[ASN][1000 genomes]
rs644547	0.84[ASN][1000 genomes]
rs7855403	0.86[ASN][1000 genomes]
rs7874483	0.94[ASN][1000 genomes]
rs9886848	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10760689	ERP44	cis	cerebellum	SCAN
rs10760689	MRPL50	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102270400-102272400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:102271200-102275000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:102271400-102272000	Enhancers	Fetal Muscle Leg	muscle
4	chr9:102271400-102272000	Enhancers	Right Atrium	heart
5	chr9:102271400-102272200	Enhancers	Fetal Heart	heart
6	chr9:102271400-102273400	Enhancers	Primary B cells from cord blood	blood
7	chr9:102271400-102273400	Enhancers	Primary B cells from peripheral blood	blood
8	chr9:102271600-102271800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:102271600-102272400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr9:102271600-102272400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr9:102271600-102272600	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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