Variant report

Variant	rs7874483
Chromosome Location	chr9:102278511-102278512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10760689	0.94[ASN][1000 genomes]
rs10988821	0.83[AMR][1000 genomes]
rs9886848	0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102275400-102280800	Enhancers	Primary B cells from cord blood	blood
2	chr9:102275800-102280800	Enhancers	Primary B cells from peripheral blood	blood
3	chr9:102276200-102279200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:102277800-102279200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr9:102278000-102278800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr9:102278000-102279200	Flanking Active TSS	GM12878-XiMat	blood
7	chr9:102278000-102279400	Enhancers	Primary hematopoietic stem cells	blood
8	chr9:102278200-102279200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr9:102278200-102279200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:102278400-102279200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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