Variant report

Variant	rs58675136
Chromosome Location	chr1:165851825-165851826
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165850733..165853515-chr1:165853523..165855444,2	MCF-7	breast:
2	chr1:165843122..165847161-chr1:165847770..165853662,6	K562	blood:
3	chr1:165851226..165853172-chr1:165855728..165858145,2	K562	blood:
4	chr1:165844323..165845929-chr1:165851824..165854208,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16855432	1.00[ASN][1000 genomes]
rs56759706	1.00[ASN][1000 genomes]
rs59910558	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60415933	1.00[ASN][1000 genomes]
rs61024132	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681589	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74118937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	esv2755529	chr1:165813862-165858354	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv437246	chr1:165822891-165860813	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165832400-165853400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:165832800-165852800	Weak transcription	Psoas Muscle	Psoas
3	chr1:165841000-165853400	Weak transcription	Gastric	stomach
4	chr1:165843200-165852400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:165843400-165852400	Weak transcription	NHLF	lung
6	chr1:165844800-165852400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:165844800-165852400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:165845200-165860000	Weak transcription	Fetal Thymus	thymus
9	chr1:165845600-165854000	Weak transcription	Fetal Intestine Large	intestine
10	chr1:165845600-165854000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr1:165845600-165861600	Weak transcription	Thymus	Thymus
12	chr1:165846400-165853600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr1:165847000-165852400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:165847000-165852800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr1:165847000-165853200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr1:165847000-165856200	Weak transcription	K562	blood
17	chr1:165847000-165859800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:165847200-165852800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr1:165847200-165853200	Weak transcription	Fetal Muscle Leg	muscle
20	chr1:165847400-165852400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:165847400-165853000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr1:165847400-165853600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:165847400-165859800	Weak transcription	NHDF-Ad	bronchial
24	chr1:165847600-165852400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:165847800-165853000	Weak transcription	Small Intestine	intestine
26	chr1:165847800-165854200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr1:165848200-165852400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr1:165848200-165852800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:165848200-165860000	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr1:165848400-165852600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr1:165848400-165852600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr1:165848400-165853600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr1:165848600-165852800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:165848600-165852800	Weak transcription	Primary B cells from cord blood	blood
35	chr1:165848600-165853200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr1:165848800-165852400	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr1:165849200-165853400	Enhancers	HepG2	liver
38	chr1:165849200-165855400	Enhancers	Fetal Heart	heart
39	chr1:165849400-165852200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr1:165849400-165852400	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr1:165849600-165853400	Weak transcription	Brain Anterior Caudate	brain
42	chr1:165849600-165853400	Weak transcription	Brain Substantia Nigra	brain
43	chr1:165849800-165852400	Weak transcription	Osteobl	bone
44	chr1:165849800-165852600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr1:165849800-165852600	Weak transcription	HSMM	muscle
46	chr1:165849800-165853000	Weak transcription	Liver	Liver
47	chr1:165849800-165853200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr1:165849800-165853400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr1:165849800-165853400	Weak transcription	HSMMtube	muscle
50	chr1:165849800-165856800	Enhancers	Stomach Mucosa	stomach

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