Variant report

Variant	rs61024132
Chromosome Location	chr1:165855817-165855818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165845971..165849103-chr1:165855397..165857265,3	MCF-7	breast:
2	chr1:165794990..165798842-chr1:165853370..165857191,6	K562	blood:
3	chr1:165851226..165853172-chr1:165855728..165858145,2	K562	blood:
4	chr1:165795506..165799769-chr1:165854711..165859131,6	MCF-7	breast:
5	chr1:165854278..165856437-chr1:165862087..165864015,2	K562	blood:
6	chr1:165847598..165850540-chr1:165853656..165856352,3	K562	blood:

Variant related genes	Relation type
ENSG00000143183	Chromatin interaction
ENSG00000143179	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16855432	1.00[ASN][1000 genomes]
rs56759706	1.00[ASN][1000 genomes]
rs58675136	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59910558	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60415933	1.00[ASN][1000 genomes]
rs6681589	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74118937	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	esv2755529	chr1:165813862-165858354	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv437246	chr1:165822891-165860813	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165845200-165860000	Weak transcription	Fetal Thymus	thymus
2	chr1:165845600-165861600	Weak transcription	Thymus	Thymus
3	chr1:165847000-165856200	Weak transcription	K562	blood
4	chr1:165847000-165859800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:165847400-165859800	Weak transcription	NHDF-Ad	bronchial
6	chr1:165848200-165860000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:165849800-165856800	Enhancers	Stomach Mucosa	stomach
8	chr1:165851400-165859400	Weak transcription	Aorta	Aorta
9	chr1:165851600-165860000	Weak transcription	NH-A	brain
10	chr1:165852000-165858000	Enhancers	GM12878-XiMat	blood
11	chr1:165852200-165859400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:165852600-165859200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr1:165852800-165856400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:165853000-165856600	Enhancers	Pancreas	Pancrea
15	chr1:165853000-165856600	Enhancers	Small Intestine	intestine
16	chr1:165853000-165857800	Enhancers	Liver	Liver
17	chr1:165853200-165857400	Enhancers	Duodenum Mucosa	Duodenum
18	chr1:165853200-165859200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:165853400-165856200	Genic enhancers	Dnd41	blood
20	chr1:165853400-165856600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:165853400-165864600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr1:165853600-165860400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr1:165853600-165860600	Weak transcription	Adipose Nuclei	Adipose
24	chr1:165853600-165860600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr1:165853800-165856000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr1:165853800-165856200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr1:165853800-165856400	Weak transcription	HMEC	breast
28	chr1:165853800-165859400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:165853800-165859400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr1:165853800-165860000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr1:165853800-165860000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr1:165853800-165860600	Weak transcription	Fetal Brain Male	brain
33	chr1:165853800-165860600	Weak transcription	Lung	lung
34	chr1:165854000-165857400	Weak transcription	Placenta	Placenta
35	chr1:165854000-165858400	Weak transcription	Osteobl	bone
36	chr1:165854000-165858600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr1:165854000-165859200	Weak transcription	Fetal Stomach	stomach
38	chr1:165854000-165859400	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr1:165854000-165859600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr1:165854000-165860600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr1:165854000-165860800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr1:165854000-165869600	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr1:165854200-165856200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr1:165854200-165857600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr1:165854200-165857600	Weak transcription	Esophagus	oesophagus
46	chr1:165854200-165859000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr1:165854200-165859200	Weak transcription	Spleen	Spleen
48	chr1:165854200-165859400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr1:165854200-165859400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr1:165854200-165860600	Weak transcription	Psoas Muscle	Psoas

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