Variant report

Variant	rs59910558
Chromosome Location	chr1:165858469-165858470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:165858294-165858722	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:165857325..165860085-chr1:170499980..170501599,2	MCF-7	breast:
2	chr1:165795506..165799769-chr1:165854711..165859131,6	MCF-7	breast:
3	chr1:165796017..165799300-chr1:165857413..165861538,3	MCF-7	breast:

Variant related genes	Relation type
UCK2	TF binding region
ENSG00000143183	Chromatin interaction
ENSG00000120370	Chromatin interaction
ENSG00000231407	Chromatin interaction
ENSG00000143179	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16855432	1.00[ASN][1000 genomes]
rs56759706	1.00[ASN][1000 genomes]
rs58675136	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60415933	1.00[ASN][1000 genomes]
rs61024132	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681589	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74118937	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv437246	chr1:165822891-165860813	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165845200-165860000	Weak transcription	Fetal Thymus	thymus
2	chr1:165845600-165861600	Weak transcription	Thymus	Thymus
3	chr1:165847000-165859800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:165847400-165859800	Weak transcription	NHDF-Ad	bronchial
5	chr1:165848200-165860000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:165851400-165859400	Weak transcription	Aorta	Aorta
7	chr1:165851600-165860000	Weak transcription	NH-A	brain
8	chr1:165852200-165859400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:165852600-165859200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:165853200-165859200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:165853400-165864600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:165853600-165860400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr1:165853600-165860600	Weak transcription	Adipose Nuclei	Adipose
14	chr1:165853600-165860600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr1:165853800-165859400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:165853800-165859400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr1:165853800-165860000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:165853800-165860000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:165853800-165860600	Weak transcription	Fetal Brain Male	brain
20	chr1:165853800-165860600	Weak transcription	Lung	lung
21	chr1:165854000-165858600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr1:165854000-165859200	Weak transcription	Fetal Stomach	stomach
23	chr1:165854000-165859400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr1:165854000-165859600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr1:165854000-165860600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr1:165854000-165860800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr1:165854000-165869600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr1:165854200-165859000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr1:165854200-165859200	Weak transcription	Spleen	Spleen
30	chr1:165854200-165859400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr1:165854200-165859400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr1:165854200-165860600	Weak transcription	Psoas Muscle	Psoas
33	chr1:165854200-165862000	Weak transcription	Right Atrium	heart
34	chr1:165854400-165859200	Weak transcription	Fetal Intestine Small	intestine
35	chr1:165854400-165859400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr1:165854400-165859800	Weak transcription	Fetal Brain Female	brain
37	chr1:165854400-165860400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr1:165854400-165860600	Weak transcription	Brain Angular Gyrus	brain
39	chr1:165854400-165865400	Weak transcription	Fetal Lung	lung
40	chr1:165854600-165859200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr1:165854600-165859200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr1:165854600-165859400	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr1:165854600-165859400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr1:165854600-165859400	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr1:165854600-165859600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr1:165854600-165860000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr1:165854600-165860400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr1:165854600-165883000	Weak transcription	Colon Smooth Muscle	Colon
49	chr1:165854800-165859800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr1:165854800-165859800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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