Variant report

Variant	rs58686737
Chromosome Location	chr7:120457226-120457227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17132716	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2107276	0.80[ASN][1000 genomes]
rs2158323	0.80[ASN][1000 genomes]
rs2158324	0.80[ASN][1000 genomes]
rs2189452	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2402551	0.80[ASN][1000 genomes]
rs3757557	0.88[ASN][1000 genomes]
rs3779386	0.85[ASN][1000 genomes]
rs3779387	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3779388	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3779389	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4141309	0.89[ASN][1000 genomes]
rs60837162	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6971854	0.85[ASN][1000 genomes]
rs73427805	0.85[ASN][1000 genomes]
rs73427831	0.89[ASN][1000 genomes]
rs73427834	0.87[ASN][1000 genomes]
rs7789807	0.96[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7800318	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120425600-120470400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:120427400-120466000	Weak transcription	Fetal Stomach	stomach
3	chr7:120430400-120468200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:120432600-120468400	Weak transcription	Lung	lung
5	chr7:120439200-120457800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:120439400-120469200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:120442600-120457400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr7:120443000-120488000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:120444000-120457400	Weak transcription	Adipose Nuclei	Adipose
10	chr7:120445200-120494400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:120446000-120476200	Weak transcription	Left Ventricle	heart
12	chr7:120446400-120457800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:120446800-120462200	Weak transcription	GM12878-XiMat	blood
14	chr7:120447400-120471400	Weak transcription	Fetal Kidney	kidney
15	chr7:120447800-120465600	Weak transcription	Liver	Liver
16	chr7:120448400-120457400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:120449800-120457600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:120449800-120476000	Weak transcription	HUVEC	blood vessel
19	chr7:120450600-120470400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:120452800-120476000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:120455000-120465800	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:120455000-120467800	Weak transcription	Fetal Heart	heart
23	chr7:120455600-120457600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:120455600-120468400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:120455600-120472200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr7:120455800-120457600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr7:120455800-120465800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr7:120455800-120474400	Weak transcription	Fetal Intestine Large	intestine
29	chr7:120455800-120476000	Weak transcription	Fetal Muscle Leg	muscle
30	chr7:120457000-120457800	Weak transcription	Fetal Intestine Small	intestine
31	chr7:120457200-120457600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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