Variant report

Variant	rs7789807
Chromosome Location	chr7:120477458-120477459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120475241..120477501-chr7:120481801..120483425,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17132716	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2107276	0.84[ASN][1000 genomes]
rs2158323	0.84[ASN][1000 genomes]
rs2158324	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2189452	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2402551	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs3757557	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3779386	0.88[ASN][1000 genomes]
rs3779387	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3779388	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3779389	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4141309	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs56755229	0.80[ASN][1000 genomes]
rs57818444	0.80[ASN][1000 genomes]
rs58686737	0.96[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60837162	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61043018	0.80[ASN][1000 genomes]
rs6971854	0.88[ASN][1000 genomes]
rs73427805	0.88[ASN][1000 genomes]
rs73427831	0.92[ASN][1000 genomes]
rs73427834	0.91[ASN][1000 genomes]
rs7800318	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv5929	chr7:120467591-120513472	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120443000-120488000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:120445200-120494400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:120466000-120479600	Weak transcription	Ovary	ovary
4	chr7:120466800-120482400	Weak transcription	Small Intestine	intestine
5	chr7:120468400-120479000	Weak transcription	Fetal Heart	heart
6	chr7:120468600-120482200	Weak transcription	Pancreas	Pancrea
7	chr7:120468600-120482400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:120468600-120483200	Weak transcription	Right Ventricle	heart
9	chr7:120468600-120487600	Weak transcription	Lung	lung
10	chr7:120470600-120484600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:120471800-120479800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:120472000-120479600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:120472600-120479800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:120473800-120482000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:120474000-120480000	Weak transcription	HSMMtube	muscle
16	chr7:120474000-120482000	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:120474000-120482200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:120474000-120482200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr7:120474000-120492400	Weak transcription	Fetal Lung	lung
20	chr7:120474000-120496400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr7:120474400-120481200	Strong transcription	Fetal Intestine Large	intestine
22	chr7:120474600-120478800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:120474600-120496600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr7:120475400-120477800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr7:120475400-120478400	Weak transcription	Adipose Nuclei	Adipose
26	chr7:120475400-120479000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr7:120475600-120480000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:120475600-120480000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:120475800-120478000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:120475800-120478000	Strong transcription	Fetal Intestine Small	intestine
31	chr7:120476000-120477800	Enhancers	GM12878-XiMat	blood
32	chr7:120476000-120478200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr7:120476000-120478400	Weak transcription	Hela-S3	cervix
34	chr7:120476000-120478800	Strong transcription	Fetal Muscle Leg	muscle
35	chr7:120476000-120479200	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr7:120476200-120477600	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr7:120476200-120478000	Strong transcription	Left Ventricle	heart
38	chr7:120476200-120478800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr7:120476400-120484200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr7:120476600-120482200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:120476600-120492400	Weak transcription	Gastric	stomach
42	chr7:120476800-120479200	Enhancers	Fetal Kidney	kidney
43	chr7:120477000-120477800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr7:120477000-120478000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr7:120477000-120478000	Strong transcription	Fetal Stomach	stomach
46	chr7:120477000-120478200	Weak transcription	HUVEC	blood vessel
47	chr7:120477000-120481200	Weak transcription	Liver	Liver
48	chr7:120477000-120482200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr7:120477000-120482400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr7:120477000-120489800	Weak transcription	Fetal Muscle Trunk	muscle

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