Variant report

Variant	rs58700306
Chromosome Location	chr1:149995505-149995506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:149994846..149996547-chr1:149998372..149999923,2	K562	blood:
2	chr1:149970593..149972989-chr1:149993853..149996794,2	K562	blood:
3	chr1:149856343..149858353-chr1:149994074..149996091,2	K562	blood:
4	chr1:149993776..149995889-chr1:150021300..150024191,2	MCF-7	breast:
5	chr1:149993826..149996579-chr1:149996891..149998482,2	MCF-7	breast:
6	chr1:149856853..149859922-chr1:149994074..149998027,3	K562	blood:
7	chr1:149993912..149996492-chr1:149997463..150000045,2	MCF-7	breast:
8	chr1:149993032..149997672-chr1:150001811..150004898,5	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000184270	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000184260	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11205309	0.81[AMR][1000 genomes]
rs11205312	0.98[ASN][1000 genomes]
rs12022928	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12023231	0.98[ASN][1000 genomes]
rs12023748	0.81[AMR][1000 genomes]
rs12082689	0.83[AMR][1000 genomes]
rs12409885	0.98[ASN][1000 genomes]
rs3738320	0.83[AMR][1000 genomes]
rs3936952	0.83[AMR][1000 genomes]
rs57252299	0.95[ASN][1000 genomes]
rs61584789	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases
2	nsv8369	chr1:149995017-149996688	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149985600-150022000	Weak transcription	Brain Substantia Nigra	brain
2	chr1:149989600-149997800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:149989600-149998000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:149990600-149998000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:149991000-149996000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:149993800-150005400	Weak transcription	Fetal Heart	heart
7	chr1:149994200-149997200	Weak transcription	Liver	Liver
8	chr1:149995000-149996800	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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