Variant report

Variant	rs58706853
Chromosome Location	chr6:121778156-121778157
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs59722048	1.00[EUR][1000 genomes]
rs60073741	1.00[EUR][1000 genomes]
rs73528582	1.00[EUR][1000 genomes]
rs73528585	1.00[EUR][1000 genomes]
rs73528596	1.00[EUR][1000 genomes]
rs73528600	1.00[EUR][1000 genomes]
rs73530299	1.00[EUR][1000 genomes]
rs73532221	1.00[EUR][1000 genomes]
rs73532248	1.00[EUR][1000 genomes]
rs73532274	1.00[EUR][1000 genomes]
rs73534436	1.00[EUR][1000 genomes]
rs73534449	1.00[EUR][1000 genomes]
rs73536328	1.00[EUR][1000 genomes]
rs73536335	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv2763596	chr6:121774402-121788965	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121769400-121779000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:121770800-121778800	Weak transcription	A549	lung
3	chr6:121775000-121778400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:121777000-121778800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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