Variant report

Variant	rs73534449
Chromosome Location	chr6:121863636-121863637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs58706853	1.00[EUR][1000 genomes]
rs59722048	1.00[EUR][1000 genomes]
rs73528582	1.00[EUR][1000 genomes]
rs73528585	1.00[EUR][1000 genomes]
rs73528596	1.00[EUR][1000 genomes]
rs73528600	1.00[EUR][1000 genomes]
rs73530299	1.00[EUR][1000 genomes]
rs73532221	1.00[EUR][1000 genomes]
rs73532248	1.00[EUR][1000 genomes]
rs73532274	1.00[EUR][1000 genomes]
rs73532300	0.82[AFR][1000 genomes]
rs73532301	0.87[AFR][1000 genomes]
rs73534415	0.91[AFR][1000 genomes]
rs73534436	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73536328	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73536335	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv1847344	chr6:121845356-121875648	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1844166	chr6:121845356-121880939	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv528731	chr6:121857609-121875648	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv526935	chr6:121860377-121875648	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121854800-121867000	Weak transcription	NHEK	skin
2	chr6:121855000-121870800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:121855200-121866000	Weak transcription	HMEC	breast
4	chr6:121859800-121867000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:121861200-121864600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:121861400-121870600	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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