Variant report

Variant	rs58708663
Chromosome Location	chr10:93885346-93885347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93883461..93886266-chr10:94049200..94052149,2	MCF-7	breast:
2	chr10:93881358..93883169-chr10:93884864..93886864,2	K562	blood:

Variant related genes	Relation type
ENSG00000198060	Chromatin interaction
ENSG00000107864	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs35412677	0.89[AMR][1000 genomes]
rs57762009	0.89[AMR][1000 genomes]
rs59509997	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59582715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6583800	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7074872	0.89[AMR][1000 genomes]
rs7075257	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7084837	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7096690	0.89[AMR][1000 genomes]
rs73314344	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316068	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316069	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316082	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73318015	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73318028	0.89[AMR][1000 genomes]
rs7907888	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93859200-93901400	Weak transcription	Primary B cells from cord blood	blood
2	chr10:93868000-93901800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:93871000-93887200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr10:93874600-93899600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:93881400-93885400	Enhancers	Aorta	Aorta
6	chr10:93881400-93885400	Enhancers	Brain Cingulate Gyrus	brain
7	chr10:93881400-93885400	Enhancers	Ovary	ovary
8	chr10:93881400-93885400	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:93881400-93886200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:93881400-93886200	Enhancers	Brain Anterior Caudate	brain
11	chr10:93881400-93886200	Enhancers	Colon Smooth Muscle	Colon
12	chr10:93881400-93886200	Enhancers	Psoas Muscle	Psoas
13	chr10:93881400-93886200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:93881400-93886200	Enhancers	Stomach Smooth Muscle	stomach
15	chr10:93881400-93886400	Enhancers	Fetal Heart	heart
16	chr10:93881400-93886400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:93881600-93885400	Enhancers	Brain Substantia Nigra	brain
18	chr10:93881600-93885800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:93881800-93886400	Enhancers	Stomach Mucosa	stomach
20	chr10:93882000-93885600	Enhancers	Brain Hippocampus Middle	brain
21	chr10:93882000-93886000	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr10:93882000-93886200	Enhancers	HUVEC	blood vessel
23	chr10:93882400-93885400	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr10:93882400-93886400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:93882400-93886400	Enhancers	HMEC	breast
26	chr10:93882600-93885400	Enhancers	A549	lung
27	chr10:93882600-93886200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:93882600-93886200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:93882600-93886200	Enhancers	NHEK	skin
30	chr10:93882600-93886200	Enhancers	Osteobl	bone
31	chr10:93882800-93885400	Enhancers	Adipose Nuclei	Adipose
32	chr10:93882800-93886200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr10:93882800-93886200	Enhancers	Right Ventricle	heart
34	chr10:93883000-93886200	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr10:93883200-93885400	Enhancers	Brain Angular Gyrus	brain
36	chr10:93883200-93885800	Enhancers	Fetal Stomach	stomach
37	chr10:93883200-93886200	Enhancers	Pancreas	Pancrea
38	chr10:93883400-93885600	Enhancers	Muscle Satellite Cultured Cells	--
39	chr10:93883400-93886200	Enhancers	Esophagus	oesophagus
40	chr10:93883600-93885400	Enhancers	Fetal Kidney	kidney
41	chr10:93883600-93886200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:93883800-93885400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:93883800-93885400	Enhancers	NHLF	lung
44	chr10:93884200-93885400	Flanking Active TSS	Hela-S3	cervix
45	chr10:93884200-93886200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:93884400-93885600	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr10:93884400-93886200	Enhancers	Right Atrium	heart
48	chr10:93884400-93887400	Enhancers	Left Ventricle	heart
49	chr10:93884400-93890600	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr10:93884600-93885400	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links