Variant report

Variant	rs73316069
Chromosome Location	chr10:93934321-93934322
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs35412677	0.89[AMR][1000 genomes]
rs57762009	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs58708663	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59509997	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59582715	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6583800	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7074872	0.89[AMR][1000 genomes]
rs7075257	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7084837	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7096690	0.89[AMR][1000 genomes]
rs73314344	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73318015	0.89[AMR][1000 genomes]
rs73318028	0.89[AMR][1000 genomes]
rs7907888	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93911800-93953200	Weak transcription	Pancreas	Pancrea
2	chr10:93926400-93976000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:93926600-93976000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:93926800-93941200	Weak transcription	Brain Anterior Caudate	brain
5	chr10:93926800-93941200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:93926800-93942000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:93926800-93982400	Weak transcription	HSMMtube	muscle
8	chr10:93927000-93935000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:93927000-93938600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:93927000-93940200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:93927000-93940600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:93927000-93947600	Weak transcription	Primary B cells from cord blood	blood
13	chr10:93927000-93963800	Weak transcription	Brain Angular Gyrus	brain
14	chr10:93927000-93966200	Weak transcription	Ovary	ovary
15	chr10:93927000-93970800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:93927200-93935400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr10:93927200-93967600	Weak transcription	Adipose Nuclei	Adipose
18	chr10:93927200-93980400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:93927400-93960000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:93927400-93966600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr10:93927400-93970800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr10:93927400-93997800	Weak transcription	Fetal Intestine Large	intestine
23	chr10:93928400-93936200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr10:93928600-93942600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr10:93928800-93949000	Weak transcription	Liver	Liver
26	chr10:93929200-93984800	Weak transcription	Fetal Intestine Small	intestine
27	chr10:93929400-93967800	Weak transcription	Colon Smooth Muscle	Colon
28	chr10:93929600-93938800	Weak transcription	Fetal Stomach	stomach
29	chr10:93930000-93935000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:93930000-93958200	Weak transcription	Hela-S3	cervix
31	chr10:93932400-93940800	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr10:93933000-93940400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr10:93933200-93941400	Weak transcription	Fetal Heart	heart
34	chr10:93934000-93940400	Weak transcription	Brain Substantia Nigra	brain
35	chr10:93934000-93940600	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr10:93934200-93935200	Weak transcription	Left Ventricle	heart
37	chr10:93934200-93936200	Weak transcription	Brain Hippocampus Middle	brain
38	chr10:93934200-93936400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:93934200-93940200	Weak transcription	Psoas Muscle	Psoas
40	chr10:93934200-93949400	Weak transcription	Lung	lung
41	chr10:93934200-93976200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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