Variant report

Variant	rs59509997
Chromosome Location	chr10:93843716-93843717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93832600..93835291-chr10:93841541..93844058,2	K562	blood:
2	chr10:93843200..93844774-chr10:93846231..93849117,2	MCF-7	breast:
3	chr10:93842541..93844667-chr10:94333754..94335512,2	K562	blood:

Variant related genes	Relation type
ENSG00000119912	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs35412677	0.89[AMR][1000 genomes]
rs57762009	0.89[AMR][1000 genomes]
rs58708663	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59582715	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6583800	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7074872	0.89[AMR][1000 genomes]
rs7075257	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7084837	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7096690	0.89[AMR][1000 genomes]
rs73314344	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316068	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316069	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316082	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73318015	0.89[AMR][1000 genomes]
rs73318028	0.89[AMR][1000 genomes]
rs7907888	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93808400-93844400	Weak transcription	Primary T cells from cord blood	blood
2	chr10:93815400-93847200	Weak transcription	Hela-S3	cervix
3	chr10:93836000-93853200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:93837400-93847600	Weak transcription	HUVEC	blood vessel
5	chr10:93837600-93847200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:93837600-93847600	Weak transcription	Colonic Mucosa	Colon
7	chr10:93839000-93847600	Weak transcription	Placenta	Placenta
8	chr10:93841000-93847400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr10:93841000-93847400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:93841200-93843800	Weak transcription	Aorta	Aorta
11	chr10:93841200-93844200	Weak transcription	Fetal Brain Female	brain
12	chr10:93841200-93845000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:93841200-93846800	Weak transcription	Lung	lung
14	chr10:93841200-93847200	Weak transcription	GM12878-XiMat	blood
15	chr10:93841200-93847400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:93841200-93847400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:93841200-93847400	Weak transcription	Fetal Intestine Small	intestine
18	chr10:93841200-93847400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:93841200-93847600	Weak transcription	Fetal Intestine Large	intestine
20	chr10:93841200-93853800	Weak transcription	Pancreas	Pancrea
21	chr10:93841200-93872400	Weak transcription	Spleen	Spleen
22	chr10:93841200-93881600	Weak transcription	Esophagus	oesophagus
23	chr10:93841400-93844200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:93841400-93847400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:93841400-93847600	Weak transcription	Adipose Nuclei	Adipose
26	chr10:93841400-93847800	Weak transcription	Primary B cells from cord blood	blood
27	chr10:93841600-93847600	Weak transcription	Brain Anterior Caudate	brain
28	chr10:93842000-93843800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr10:93842400-93844000	Enhancers	Brain Hippocampus Middle	brain
30	chr10:93842400-93844000	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr10:93842600-93843800	Enhancers	Fetal Heart	heart
32	chr10:93842600-93844000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr10:93842800-93847400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:93842800-93848000	Weak transcription	Ovary	ovary
35	chr10:93843000-93843800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr10:93843200-93843800	Enhancers	Placenta Amnion	Placenta Amnion
37	chr10:93843200-93847400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr10:93843200-93847400	Weak transcription	Right Atrium	heart
39	chr10:93843200-93847400	Weak transcription	Stomach Mucosa	stomach
40	chr10:93843200-93847600	Weak transcription	Colon Smooth Muscle	Colon
41	chr10:93843200-93847800	Weak transcription	NHDF-Ad	bronchial
42	chr10:93843200-93848800	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr10:93843400-93843800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:93843400-93847400	Weak transcription	HepG2	liver
45	chr10:93843400-93847600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr10:93843600-93843800	Enhancers	Left Ventricle	heart
47	chr10:93843600-93844000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr10:93843600-93844000	Enhancers	Psoas Muscle	Psoas
49	chr10:93843600-93846400	Weak transcription	Brain Substantia Nigra	brain
50	chr10:93843600-93847200	Weak transcription	Osteobl	bone

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