Variant report

Variant	rs58745487
Chromosome Location	chr9:884199-884200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:879492..881659-chr9:881684..884926,3	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1033833	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16925225	0.96[EUR][1000 genomes]
rs16925320	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16925359	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16925370	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16925372	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16925374	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16925404	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16925431	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16925457	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16925460	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16925475	0.88[EUR][1000 genomes]
rs55700540	0.88[EUR][1000 genomes]
rs55714436	0.84[EUR][1000 genomes]
rs56314823	0.88[EUR][1000 genomes]
rs56357977	0.84[EUR][1000 genomes]
rs56785457	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58702912	0.88[EUR][1000 genomes]
rs58861585	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59168737	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59404070	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60629115	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61693331	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73372798	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73372801	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73374703	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73374707	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73374708	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73374718	0.86[EUR][1000 genomes]
rs73374720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73374722	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73374726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73374728	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73374737	0.81[EUR][1000 genomes]
rs73374740	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73374751	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73374758	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73374764	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73374775	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73374776	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73374778	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73374788	0.88[EUR][1000 genomes]
rs73378422	0.88[EUR][1000 genomes]
rs73639464	0.96[EUR][1000 genomes]
rs7847296	0.96[EUR][1000 genomes]
rs7852019	0.96[EUR][1000 genomes]
rs7864481	0.96[EUR][1000 genomes]
rs7867920	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949051	chr9:40910-925305	Bivalent Enhancer Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1034557	chr9:209254-964422	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv539828	chr9:209254-964422	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv533964	chr9:314969-910448	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1021206	chr9:399146-911325	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv1025492	chr9:478813-1157169	Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv539897	chr9:478813-1157169	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv949533	chr9:584087-904106	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
9	nsv429977	chr9:584087-983301	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
10	nsv1034136	chr9:588657-964422	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
11	nsv1021740	chr9:596826-923709	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
12	nsv613037	chr9:643453-1138368	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	nsv892000	chr9:678951-972476	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
14	nsv1026138	chr9:685080-910449	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
15	nsv539907	chr9:685080-910449	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
16	nsv817248	chr9:706283-1457665	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
17	nsv831491	chr9:794113-974142	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv892009	chr9:841152-947880	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
19	nsv892010	chr9:841152-1069663	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:883600-894200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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