Variant report

Variant	rs58752621
Chromosome Location	chr12:68385430-68385431
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2860600	1.00[EUR][1000 genomes]
rs2906861	1.00[EUR][1000 genomes]
rs57329873	1.00[EUR][1000 genomes]
rs58233262	1.00[EUR][1000 genomes]
rs58627876	1.00[AMR][1000 genomes]
rs59443438	1.00[AMR][1000 genomes]
rs59781510	1.00[AMR][1000 genomes]
rs7297341	1.00[EUR][1000 genomes]
rs73320687	1.00[EUR][1000 genomes]
rs73324839	1.00[AMR][1000 genomes]
rs73324853	1.00[AMR][1000 genomes]
rs73324861	1.00[AMR][1000 genomes]
rs73324877	1.00[AMR][1000 genomes]
rs73324889	1.00[AMR][1000 genomes]
rs74099722	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1039638	chr12:68293351-68399871	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv975509	chr12:68382193-68405026	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68383800-68385600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr12:68383800-68386600	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr12:68384000-68385600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr12:68384000-68386800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr12:68384400-68385600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr12:68384800-68385600	Flanking Active TSS	Primary B cells from peripheral blood	blood
7	chr12:68384800-68385600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr12:68384800-68385600	Flanking Active TSS	GM12878-XiMat	blood
9	chr12:68385000-68385600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
10	chr12:68385000-68385600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr12:68385200-68385600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
12	chr12:68385200-68385600	Active TSS	Sigmoid Colon	Sigmoid Colon
13	chr12:68385400-68385600	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr12:68385400-68387000	Enhancers	Primary T helper naive cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links